| TF name | Position | PWM scan score |
| CytR | 44-83 | 13.819 |
| H-NS | 351-365 | 12.931 |
| Mlc | 344-366 | 12.543 |
| NagC | 346-368 | 11.299 |
| GadE | 65-84 | 11.107 |
| GcvA | 368-396 | 10.739 |
| NarP | 15-21 | 10.661 |
| Fis | 213-233 | 10.592 |
| FNR | 47-68 | 10.410 |
| MarA | 38-58 | 10.067 |
| CRP | 39-60 | 9.425 |
| LacI | 156-176 | 8.439 |
| SoxS | 340-357 | 7.975 |
| Rob | 54-74 | 7.871 |
| MalT | 235-244 | 7.672 |
| ModE | 285-311 | 7.139 |
| Lrp | 293-304 | 7.062 |
| GntR | 6-25 | 7.009 |
| AraC | 204-221 | 6.972 |
| NarL | 295-301 | 6.854 |
| OmpR | 338-357 | 6.801 |
| Ada | 176-203 | 6.560 |
| XylR | 301-318 | 6.497 |
| RhaS | 156-172 | 6.463 |
| IHF | 203-215 | 6.288 |
| PhoB | 349-368 | 6.279 |
| DnaA | 198-206 | 6.219 |
| MetR | 198-221 | 6.107 |
| RcsB | 378-391 | 5.977 |
| ArcA | 196-256 | 5.857 |
| ArgP | 292-304 | 5.737 |
| TyrR | 286-307 | 5.557 |
| NtrC | 290-306 | 5.540 |
| GalS | 217-232 | 5.394 |
| GalR | 217-232 | 5.394 |
| IdnR | 384-399 | 5.249 |