| TF name | Position | PWM scan score |
| NagC | 2-24 | 10.608 |
| H-NS | 155-169 | 9.838 |
| Ada | 372-399 | 9.667 |
| UxuR | 331-348 | 9.530 |
| MalT | 263-272 | 8.324 |
| TorR | 29-38 | 8.127 |
| XylR | 117-134 | 7.998 |
| ArcA | 23-83 | 7.819 |
| CysB | 35-76 | 7.760 |
| NarP | 68-74 | 7.232 |
| AraC | 30-47 | 7.182 |
| MetJ | 203-210 | 7.138 |
| PurR | 383-398 | 7.126 |
| CpxR | 15-29 | 7.125 |
| DnaA | 358-366 | 7.095 |
| NtrC | 181-197 | 6.997 |
| NarL | 11-17 | 6.880 |
| IHF | 91-103 | 6.839 |
| Fis | 166-186 | 6.776 |
| PhoP | 54-70 | 6.664 |
| RcsB | 47-60 | 6.594 |
| ArgP | 119-131 | 6.589 |
| GadE | 48-67 | 6.316 |
| ArgR | 32-47 | 6.218 |
| NorR | 39-55 | 6.152 |
| CRP | 157-178 | 6.025 |
| SoxS | 361-378 | 6.015 |
| GlpR | 263-282 | 5.955 |
| LacI | 245-265 | 5.801 |
| OmpR | 328-347 | 5.749 |
| ModE | 17-43 | 5.702 |
| Nac | 119-133 | 5.621 |
| MarA | 230-250 | 5.269 |
| Rob | 351-371 | 5.259 |