| TF name | Position | PWM scan score |
| RcsB | 194-207 | 11.048 |
| NagC | 168-190 | 10.082 |
| MarA | 315-335 | 9.871 |
| PhoP | 111-127 | 8.989 |
| H-NS | 153-167 | 8.812 |
| ArgR | 22-37 | 8.798 |
| DnaA | 273-281 | 8.718 |
| SoxS | 216-233 | 8.663 |
| ArcA | 152-212 | 8.244 |
| XylR | 80-97 | 8.239 |
| AgaR | 79-102 | 8.206 |
| NtrC | 262-278 | 7.963 |
| AraC | 20-37 | 7.956 |
| ModE | 190-216 | 7.535 |
| CRP | 155-176 | 7.499 |
| IHF | 20-32 | 7.449 |
| UlaR | 228-247 | 7.375 |
| NarP | 78-84 | 7.302 |
| LexA | 378-397 | 7.216 |
| Mlc | 137-159 | 7.192 |
| NarL | 212-218 | 6.944 |
| Fis | 175-195 | 6.568 |
| MelR | 112-129 | 6.447 |
| FruR | 222-239 | 6.394 |
| CytR | 13-52 | 6.255 |
| Lrp | 164-175 | 6.238 |
| MetJ | 217-224 | 6.091 |
| FNR | 169-190 | 5.880 |
| PhoB | 184-203 | 5.727 |
| MalT | 230-239 | 5.649 |
| UxuR | 183-200 | 5.642 |
| CpxR | 49-63 | 5.367 |
| ArgP | 120-132 | 5.217 |