| TF name | Position | PWM scan score |
| FruR | 18-35 | 10.814 |
| TorR | 227-236 | 10.105 |
| DnaA | 315-323 | 9.197 |
| UlaR | 40-59 | 9.020 |
| PhoB | 11-30 | 8.899 |
| GntR | 204-223 | 8.115 |
| AraC | 42-59 | 7.852 |
| FNR | 28-49 | 7.703 |
| PhoP | 218-234 | 7.652 |
| Nac | 97-111 | 7.382 |
| Lrp | 207-218 | 7.286 |
| RcsB | 383-396 | 7.024 |
| IdnR | 355-370 | 6.709 |
| NarL | 364-370 | 6.696 |
| Rob | 163-183 | 5.791 |
| CytR | 19-58 | 5.719 |
| MalT | 285-294 | 5.527 |
| MarA | 148-168 | 5.491 |
| OmpR | 118-137 | 5.484 |
| MetJ | 101-108 | 5.408 |
| H-NS | 107-121 | 5.359 |
| TyrR | 113-134 | 5.337 |
| NarP | 260-266 | 5.084 |