| TF name | Position | PWM scan score |
| GntR | 99-118 | 13.278 |
| UlaR | 93-112 | 12.960 |
| AgaR | 56-79 | 12.812 |
| CueR | 342-360 | 12.562 |
| Fis | 86-106 | 12.312 |
| ArcA | 45-105 | 12.042 |
| CytR | 59-98 | 11.737 |
| RcsB | 94-107 | 11.366 |
| ArgP | 92-104 | 10.724 |
| IHF | 96-108 | 10.552 |
| Ada | 54-81 | 10.386 |
| MelR | 39-56 | 9.964 |
| LacI | 199-219 | 9.015 |
| FNR | 80-101 | 8.989 |
| Nac | 82-96 | 8.967 |
| NarL | 109-115 | 8.755 |
| AraC | 90-107 | 8.099 |
| Lrp | 93-104 | 7.993 |
| LexA | 103-122 | 7.871 |
| UxuR | 149-166 | 7.685 |
| XylR | 75-92 | 7.589 |
| PhoB | 53-72 | 7.504 |
| DnaA | 311-319 | 6.896 |
| MetR | 133-156 | 6.832 |
| DeoR | 111-126 | 6.511 |
| RhaS | 108-124 | 6.505 |
| PurR | 211-226 | 6.430 |
| FadR | 172-188 | 6.422 |
| H-NS | 22-36 | 6.273 |
| CpxR | 154-168 | 6.237 |
| SoxS | 377-394 | 6.227 |
| TorR | 96-105 | 6.182 |
| OxyR | 85-129 | 6.172 |
| ModE | 143-169 | 6.148 |
| OmpR | 83-102 | 6.006 |
| NagC | 75-97 | 5.906 |
| TyrR | 83-104 | 5.890 |
| Fur | 90-104 | 5.719 |
| CRP | 99-120 | 5.705 |
| ArgR | 89-104 | 5.611 |
| MarA | 166-186 | 5.471 |
| CysB | 69-110 | 5.319 |
| MetJ | 38-45 | 5.185 |
| PhoP | 98-114 | 5.087 |