| TF name | Position | PWM scan score |
| ArcA | 306-366 | 14.766 |
| CueR | 169-187 | 14.192 |
| FNR | 336-357 | 13.832 |
| MarA | 303-323 | 13.741 |
| CRP | 333-354 | 12.145 |
| OmpR | 315-334 | 11.659 |
| GlpR | 335-354 | 10.823 |
| CysB | 306-347 | 10.325 |
| GcvA | 327-355 | 10.208 |
| IHF | 352-364 | 9.315 |
| Ada | 235-262 | 8.902 |
| H-NS | 318-332 | 8.822 |
| ArgP | 344-356 | 8.813 |
| Lrp | 306-317 | 8.608 |
| Rob | 342-362 | 8.359 |
| Mlc | 332-354 | 8.353 |
| TorR | 241-250 | 8.215 |
| ModE | 319-345 | 8.103 |
| Fis | 299-319 | 7.715 |
| UlaR | 270-289 | 7.657 |
| Nac | 265-279 | 7.255 |
| DnaA | 255-263 | 7.188 |
| GadE | 339-358 | 7.103 |
| SoxS | 320-337 | 7.048 |
| RcsB | 200-213 | 7.008 |
| AgaR | 255-278 | 6.743 |
| ArgR | 297-312 | 6.697 |
| XylR | 107-124 | 6.644 |
| PhoB | 301-320 | 6.611 |
| PhoP | 320-336 | 6.459 |
| MetJ | 336-343 | 6.390 |
| Fur | 330-344 | 6.264 |
| NarP | 282-288 | 6.076 |
| FhlA | 266-305 | 5.995 |
| NarL | 306-312 | 5.902 |
| DeoR | 339-354 | 5.873 |
| NorR | 368-384 | 5.722 |
| IdnR | 337-352 | 5.647 |
| TyrR | 47-68 | 5.424 |
| NtrC | 378-394 | 5.417 |
| DcuR | 235-289 | 5.057 |
| RhaS | 169-185 | 5.050 |