| TF name | Position | PWM scan score |
| XylR | 84-101 | 18.044 |
| Rob | 138-158 | 12.226 |
| OmpR | 377-396 | 7.747 |
| MalT | 13-22 | 7.675 |
| CueR | 164-182 | 7.467 |
| MetJ | 64-71 | 7.056 |
| PhoB | 349-368 | 6.903 |
| Lrp | 117-128 | 6.775 |
| Mlc | 78-100 | 6.686 |
| TorR | 73-82 | 6.610 |
| NarL | 345-351 | 6.331 |
| SoxS | 210-227 | 5.964 |
| Fis | 370-390 | 5.713 |
| PhoP | 125-141 | 5.693 |
| LacI | 274-294 | 5.631 |
| GalR | 136-151 | 5.612 |
| GalS | 136-151 | 5.612 |
| Nac | 221-235 | 5.575 |
| NorR | 75-91 | 5.450 |
| UlaR | 159-178 | 5.244 |
| DnaA | 368-376 | 5.062 |