| TF name | Position | PWM scan score |
| UlaR | 104-123 | 14.874 |
| MalT | 170-179 | 12.450 |
| PhoB | 308-327 | 10.977 |
| DeoR | 225-240 | 10.884 |
| AraC | 86-103 | 9.648 |
| IHF | 306-318 | 9.648 |
| ArgR | 253-268 | 9.494 |
| AgaR | 96-119 | 8.037 |
| TorR | 246-255 | 7.837 |
| NagC | 180-202 | 7.828 |
| XylR | 214-231 | 7.526 |
| FadR | 41-57 | 7.468 |
| FNR | 306-327 | 7.424 |
| LacI | 203-223 | 7.327 |
| H-NS | 218-232 | 6.970 |
| Lrp | 115-126 | 6.835 |
| GntR | 113-132 | 6.776 |
| CpxR | 197-211 | 6.647 |
| DnaA | 225-233 | 6.433 |
| OmpR | 190-209 | 6.249 |
| ModE | 306-332 | 6.219 |
| MelR | 106-123 | 6.136 |
| ArgP | 114-126 | 6.101 |
| MarA | 254-274 | 5.852 |
| Rob | 216-236 | 5.794 |
| NorR | 100-116 | 5.710 |
| NarL | 374-380 | 5.595 |
| Fis | 98-118 | 5.578 |
| MetR | 227-250 | 5.494 |
| GlpR | 183-202 | 5.356 |
| GadE | 225-244 | 5.261 |
| NtrC | 375-391 | 5.089 |
| PhoP | 252-268 | 5.067 |