| TF name | Position | PWM scan score |
| RcsB | 168-181 | 11.703 |
| DeoR | 264-279 | 11.139 |
| NarP | 96-102 | 9.705 |
| IHF | 387-399 | 9.455 |
| NtrC | 252-268 | 9.396 |
| MelR | 212-229 | 9.355 |
| MalT | 297-306 | 9.278 |
| GntR | 171-190 | 8.594 |
| H-NS | 176-190 | 8.206 |
| Fis | 168-188 | 8.152 |
| ArgP | 177-189 | 7.965 |
| SoxS | 167-184 | 7.607 |
| MarA | 190-210 | 7.596 |
| GlpR | 112-131 | 7.305 |
| OmpR | 168-187 | 7.254 |
| CpxR | 369-383 | 7.148 |
| AraC | 249-266 | 7.018 |
| Lrp | 173-184 | 6.868 |
| OxyR | 238-282 | 6.780 |
| PhoB | 338-357 | 6.715 |
| MetJ | 36-43 | 6.600 |
| FNR | 176-197 | 6.415 |
| XylR | 344-361 | 6.394 |
| DnaA | 369-377 | 6.141 |
| NorR | 134-150 | 5.754 |
| ModE | 168-194 | 5.714 |
| Rob | 379-399 | 5.650 |
| UxuR | 351-368 | 5.642 |
| CRP | 173-194 | 5.546 |
| Mlc | 254-276 | 5.398 |
| NagC | 256-278 | 5.205 |