| TF name | Position | PWM scan score |
| DeoR | 322-337 | 16.450 |
| MarA | 319-339 | 11.717 |
| CRP | 24-45 | 10.968 |
| SoxS | 49-66 | 10.563 |
| GalS | 60-75 | 10.302 |
| GalR | 60-75 | 10.302 |
| NorR | 342-358 | 10.036 |
| PhoP | 296-312 | 10.006 |
| CpxR | 60-74 | 9.845 |
| TorR | 222-231 | 9.343 |
| Lrp | 143-154 | 9.004 |
| MetJ | 308-315 | 8.664 |
| UlaR | 115-134 | 8.600 |
| OmpR | 105-124 | 8.226 |
| ArcA | 302-362 | 8.095 |
| Fis | 71-91 | 7.812 |
| H-NS | 337-351 | 7.719 |
| IHF | 59-71 | 7.301 |
| MetR | 110-133 | 7.082 |
| Nac | 31-45 | 7.072 |
| MelR | 118-135 | 7.034 |
| LexA | 329-348 | 6.928 |
| LacI | 239-259 | 6.645 |
| FNR | 312-333 | 6.580 |
| GlpR | 24-43 | 6.507 |
| AraC | 3-20 | 6.454 |
| FadR | 234-250 | 6.306 |
| ModE | 15-41 | 6.219 |
| PhoB | 29-48 | 6.214 |
| TyrR | 112-133 | 6.211 |
| Mlc | 319-341 | 5.907 |
| GadE | 322-341 | 5.872 |
| AgaR | 122-145 | 5.781 |
| PurR | 60-75 | 5.750 |
| XylR | 376-393 | 5.723 |
| NarL | 360-366 | 5.595 |
| NarP | 39-45 | 5.482 |
| RcsB | 118-131 | 5.383 |
| MalT | 175-184 | 5.293 |
| ArgR | 57-72 | 5.049 |