| TF name | Position | PWM scan score |
| GadE | 373-392 | 9.543 |
| NarL | 376-382 | 8.190 |
| AgaR | 25-48 | 8.127 |
| ArgP | 376-388 | 7.974 |
| H-NS | 372-386 | 6.932 |
| NarP | 57-63 | 6.904 |
| Nac | 349-363 | 6.577 |
| XylR | 333-350 | 6.388 |
| PhoP | 379-395 | 6.329 |
| Lrp | 34-45 | 5.767 |
| UlaR | 336-355 | 5.765 |
| GntR | 301-320 | 5.618 |
| SoxS | 304-321 | 5.464 |
| FadR | 216-232 | 5.312 |
| Fis | 229-249 | 5.308 |
| Ada | 132-159 | 5.045 |