| TF name | Position | PWM scan score |
| DcuR | 177-231 | 16.216 |
| TyrR | 137-158 | 12.046 |
| MarA | 49-69 | 11.325 |
| PhoB | 170-189 | 11.138 |
| ArcA | 199-259 | 10.596 |
| GadE | 332-351 | 10.364 |
| UlaR | 243-262 | 10.034 |
| CysB | 198-239 | 9.540 |
| CRP | 238-259 | 9.457 |
| Fur | 186-200 | 9.309 |
| MetJ | 121-128 | 8.617 |
| ArgR | 150-165 | 8.587 |
| CueR | 377-395 | 8.497 |
| SoxS | 381-398 | 8.345 |
| DnaA | 197-205 | 8.284 |
| IHF | 232-244 | 8.117 |
| GalS | 164-179 | 8.097 |
| GalR | 164-179 | 8.097 |
| Nac | 142-156 | 7.990 |
| H-NS | 5-19 | 7.828 |
| OmpR | 199-218 | 7.776 |
| CpxR | 233-247 | 7.634 |
| Fis | 247-267 | 7.629 |
| OxyR | 164-208 | 7.622 |
| NagC | 232-254 | 7.510 |
| MetR | 218-241 | 7.368 |
| DeoR | 61-76 | 7.294 |
| NorR | 5-21 | 7.174 |
| Lrp | 226-237 | 6.914 |
| FNR | 241-262 | 6.900 |
| RcsB | 3-16 | 6.485 |
| PspF | 243-259 | 6.463 |
| XylR | 1-18 | 6.414 |
| NarL | 25-31 | 6.388 |
| CytR | 311-350 | 6.082 |
| MalT | 310-319 | 6.002 |
| AraC | 317-334 | 5.991 |
| UxuR | 325-342 | 5.721 |
| ArgP | 324-336 | 5.458 |
| Mlc | 229-251 | 5.383 |
| Rob | 166-186 | 5.208 |