| TF name | Position | PWM scan score |
| PhoP | 263-279 | 12.577 |
| Nac | 87-101 | 10.949 |
| SoxS | 164-181 | 10.415 |
| GalR | 165-180 | 10.097 |
| GalS | 165-180 | 10.097 |
| MalT | 355-364 | 9.708 |
| Rob | 200-220 | 9.206 |
| MetR | 212-235 | 8.846 |
| OmpR | 44-63 | 8.658 |
| FadR | 190-206 | 8.486 |
| NorR | 103-119 | 8.128 |
| Ada | 290-317 | 8.050 |
| H-NS | 85-99 | 7.961 |
| GntR | 80-99 | 7.860 |
| AraC | 134-151 | 7.416 |
| GlpR | 87-106 | 7.368 |
| MarA | 277-297 | 7.358 |
| TyrR | 42-63 | 7.316 |
| IHF | 1-13 | 7.292 |
| FNR | 29-50 | 7.187 |
| XylR | 275-292 | 6.776 |
| MetJ | 343-350 | 6.600 |
| NarP | 336-342 | 6.524 |
| TorR | 278-287 | 6.460 |
| PspF | 202-218 | 6.421 |
| Lrp | 139-150 | 6.352 |
| DcuR | 3-57 | 6.345 |
| PhoB | 100-119 | 6.337 |
| Fis | 206-226 | 6.336 |
| NarL | 372-378 | 6.169 |
| DeoR | 279-294 | 5.782 |
| ArgP | 47-59 | 5.743 |
| MelR | 130-147 | 5.546 |
| ArgR | 187-202 | 5.163 |
| DnaA | 50-58 | 5.155 |
| UlaR | 35-54 | 5.143 |
| RhaS | 322-338 | 5.091 |