| TF name | Position | PWM scan score |
| OxyR | 248-292 | 13.793 |
| PspF | 119-135 | 12.269 |
| Mlc | 265-287 | 11.911 |
| CytR | 46-85 | 11.427 |
| RcsB | 327-340 | 9.976 |
| CRP | 197-218 | 9.446 |
| ArgP | 283-295 | 8.813 |
| UlaR | 176-195 | 8.600 |
| Nac | 80-94 | 8.529 |
| H-NS | 80-94 | 8.411 |
| CueR | 346-364 | 8.406 |
| MetR | 196-219 | 8.385 |
| NarP | 291-297 | 8.382 |
| MelR | 89-106 | 8.270 |
| IHF | 206-218 | 8.217 |
| NtrC | 76-92 | 8.029 |
| Ada | 241-268 | 7.929 |
| UxuR | 69-86 | 7.867 |
| GcvA | 180-208 | 7.662 |
| Lrp | 256-267 | 7.201 |
| GlpR | 313-332 | 7.055 |
| TorR | 205-214 | 6.782 |
| FhlA | 106-145 | 6.633 |
| FNR | 268-289 | 6.436 |
| RhaS | 101-117 | 6.412 |
| AgaR | 204-227 | 6.307 |
| NagC | 260-282 | 6.276 |
| NarL | 102-108 | 6.252 |
| Fur | 126-140 | 5.921 |
| MalT | 158-167 | 5.910 |
| DnaA | 4-12 | 5.860 |
| IdnR | 171-186 | 5.290 |
| SoxS | 10-27 | 5.214 |