| TF name | Position | PWM scan score |
| CytR | 317-356 | 15.236 |
| GcvA | 349-377 | 15.131 |
| ArcA | 269-329 | 13.909 |
| OmpR | 339-358 | 12.779 |
| TyrR | 345-366 | 12.637 |
| FadR | 39-55 | 11.695 |
| H-NS | 318-332 | 11.525 |
| NagC | 299-321 | 11.503 |
| ArgP | 271-283 | 11.257 |
| CysB | 316-357 | 10.873 |
| FNR | 323-344 | 10.760 |
| IHF | 291-303 | 10.743 |
| ArgR | 311-326 | 10.638 |
| Mlc | 269-291 | 10.281 |
| GadE | 319-338 | 9.155 |
| MetR | 342-365 | 8.936 |
| PhoB | 353-372 | 8.792 |
| RcsB | 38-51 | 8.632 |
| AraC | 115-132 | 8.626 |
| CpxR | 264-278 | 8.592 |
| Fis | 292-312 | 8.006 |
| GntR | 295-314 | 7.952 |
| PspF | 276-292 | 7.935 |
| GalR | 219-234 | 7.911 |
| GalS | 219-234 | 7.911 |
| MetJ | 117-124 | 7.893 |
| Lrp | 206-217 | 7.850 |
| MarA | 278-298 | 7.767 |
| Rob | 70-90 | 7.740 |
| NarL | 100-106 | 7.310 |
| XylR | 308-325 | 7.257 |
| AgaR | 255-278 | 7.186 |
| PhoP | 368-384 | 7.162 |
| LexA | 133-152 | 6.820 |
| NtrC | 309-325 | 6.809 |
| DeoR | 161-176 | 6.677 |
| NorR | 361-377 | 6.653 |
| OxyR | 281-325 | 6.563 |
| MalT | 1-10 | 6.528 |
| NarP | 143-149 | 6.368 |
| IdnR | 358-373 | 6.188 |
| UxuR | 140-157 | 6.084 |
| CRP | 312-333 | 5.895 |
| RhaS | 161-177 | 5.862 |
| TorR | 361-370 | 5.631 |
| DnaA | 317-325 | 5.514 |
| ModE | 280-306 | 5.473 |
| Fur | 17-31 | 5.463 |
| GlpR | 129-148 | 5.181 |
| Nac | 268-282 | 5.122 |