| TF name | Position | PWM scan score |
| MelR | 17-34 | 17.526 |
| AgaR | 242-265 | 15.925 |
| OmpR | 66-85 | 12.919 |
| Fis | 364-384 | 12.189 |
| UxuR | 295-312 | 11.250 |
| ArgR | 235-250 | 11.152 |
| H-NS | 218-232 | 10.523 |
| ArcA | 96-156 | 10.392 |
| TyrR | 364-385 | 10.157 |
| SoxS | 84-101 | 9.687 |
| NagC | 104-126 | 9.327 |
| XylR | 166-183 | 9.303 |
| IHF | 130-142 | 9.229 |
| Lrp | 85-96 | 9.108 |
| GadE | 126-145 | 9.054 |
| GlpR | 120-139 | 8.577 |
| NtrC | 314-330 | 8.427 |
| DeoR | 176-191 | 8.365 |
| Fur | 364-378 | 8.221 |
| NarL | 69-75 | 8.142 |
| GcvA | 164-192 | 7.840 |
| FadR | 353-369 | 7.727 |
| IdnR | 184-199 | 7.710 |
| ArgP | 195-207 | 7.666 |
| MarA | 113-133 | 7.541 |
| Rob | 367-387 | 7.423 |
| CRP | 269-290 | 7.276 |
| RhaS | 91-107 | 7.011 |
| CysB | 164-205 | 6.840 |
| Nac | 334-348 | 6.464 |
| CytR | 207-246 | 6.401 |
| LacI | 91-111 | 6.388 |
| NorR | 369-385 | 6.346 |
| DnaA | 29-37 | 6.219 |
| NarP | 203-209 | 6.205 |
| AraC | 287-304 | 6.153 |
| PhoB | 160-179 | 5.916 |
| FruR | 27-44 | 5.707 |
| PhoP | 295-311 | 5.707 |
| FNR | 91-112 | 5.685 |
| UlaR | 110-129 | 5.607 |
| TorR | 331-340 | 5.538 |
| PspF | 77-93 | 5.395 |
| MalT | 317-326 | 5.377 |
| CueR | 311-329 | 5.246 |