| TF name | Position | PWM scan score |
| ArcA | 167-227 | 17.063 |
| Fur | 202-216 | 14.526 |
| OxyR | 194-238 | 14.403 |
| OmpR | 188-207 | 14.222 |
| GadE | 70-89 | 13.154 |
| CysB | 166-207 | 12.690 |
| CytR | 204-243 | 12.686 |
| MetR | 215-238 | 12.156 |
| FNR | 100-121 | 11.315 |
| PspF | 269-285 | 10.929 |
| TyrR | 302-323 | 10.664 |
| Rob | 98-118 | 10.488 |
| AraC | 221-238 | 9.475 |
| ModE | 193-219 | 9.350 |
| UlaR | 226-245 | 9.300 |
| GlpR | 365-384 | 8.942 |
| DcuR | 179-233 | 8.939 |
| NarL | 115-121 | 8.755 |
| XylR | 224-241 | 8.629 |
| DeoR | 367-382 | 8.615 |
| MarA | 364-384 | 8.615 |
| PhoP | 73-89 | 8.542 |
| IHF | 179-191 | 8.484 |
| H-NS | 377-391 | 8.394 |
| Lrp | 223-234 | 8.370 |
| CRP | 357-378 | 8.362 |
| NagC | 153-175 | 8.238 |
| ArgP | 197-209 | 8.145 |
| PhoB | 189-208 | 7.895 |
| TorR | 340-349 | 7.821 |
| Fis | 122-142 | 7.728 |
| GcvA | 186-214 | 7.645 |
| RcsB | 196-209 | 7.593 |
| NorR | 100-116 | 7.493 |
| Nac | 106-120 | 7.426 |
| AgaR | 194-217 | 7.111 |
| ArgR | 200-215 | 7.100 |
| MetJ | 259-266 | 6.732 |
| Mlc | 176-198 | 5.951 |
| Ada | 33-60 | 5.839 |
| NarP | 208-214 | 5.801 |
| DnaA | 74-82 | 5.233 |
| PurR | 132-147 | 5.145 |
| MalT | 270-279 | 5.114 |
| SoxS | 368-385 | 5.015 |