| TF name | Position | PWM scan score |
| PspF | 233-249 | 13.200 |
| ArcA | 293-353 | 11.427 |
| IHF | 312-324 | 9.716 |
| Rob | 125-145 | 9.246 |
| FNR | 286-307 | 8.855 |
| NtrC | 198-214 | 8.575 |
| MetJ | 306-313 | 8.530 |
| OmpR | 341-360 | 7.988 |
| PhoB | 300-319 | 7.580 |
| AgaR | 314-337 | 7.485 |
| RhaS | 237-253 | 7.399 |
| Nac | 283-297 | 7.385 |
| XylR | 298-315 | 7.177 |
| MarA | 205-225 | 7.159 |
| Fis | 334-354 | 6.990 |
| NagC | 319-341 | 6.502 |
| MelR | 357-374 | 6.106 |
| CytR | 160-199 | 6.060 |
| H-NS | 235-249 | 6.033 |
| Lrp | 329-340 | 5.805 |
| UxuR | 306-323 | 5.555 |
| NorR | 382-398 | 5.449 |
| GalR | 145-160 | 5.434 |
| GalS | 145-160 | 5.434 |
| UlaR | 204-223 | 5.433 |
| LacI | 367-387 | 5.407 |
| Mlc | 317-339 | 5.215 |
| CRP | 283-304 | 5.049 |