| TF name | Position | PWM scan score |
| ArcA | 37-97 | 16.063 |
| Mlc | 230-252 | 11.658 |
| PhoB | 236-255 | 10.187 |
| XylR | 320-337 | 10.005 |
| PhoP | 91-107 | 9.909 |
| Fis | 97-117 | 9.598 |
| Lrp | 91-102 | 9.584 |
| IdnR | 87-102 | 9.394 |
| RcsB | 346-359 | 9.362 |
| GcvA | 297-325 | 8.859 |
| H-NS | 64-78 | 8.733 |
| CRP | 274-295 | 8.595 |
| UlaR | 70-89 | 8.517 |
| IHF | 43-55 | 8.493 |
| OmpR | 321-340 | 8.403 |
| PurR | 129-144 | 8.340 |
| GlpR | 374-393 | 8.279 |
| Rob | 92-112 | 8.205 |
| LacI | 247-267 | 8.005 |
| MetR | 65-88 | 7.974 |
| FadR | 322-338 | 7.914 |
| DnaA | 127-135 | 7.886 |
| TorR | 285-294 | 7.822 |
| GntR | 78-97 | 7.783 |
| FruR | 320-337 | 7.569 |
| UxuR | 316-333 | 7.429 |
| GadE | 10-29 | 7.313 |
| MarA | 59-79 | 7.216 |
| ArgR | 88-103 | 7.215 |
| SoxS | 61-78 | 7.199 |
| Nac | 192-206 | 7.003 |
| MetJ | 390-397 | 6.783 |
| CytR | 303-342 | 6.763 |
| ArgP | 301-313 | 6.589 |
| Fur | 222-236 | 6.537 |
| NarL | 224-230 | 6.534 |
| AgaR | 73-96 | 6.500 |
| TrpR | 362-379 | 6.404 |
| ModE | 34-60 | 6.352 |
| AraC | 129-146 | 6.314 |
| CpxR | 92-106 | 6.211 |
| NorR | 227-243 | 6.120 |
| NtrC | 360-376 | 6.092 |
| CysB | 235-276 | 5.984 |
| Ada | 311-338 | 5.866 |
| FNR | 80-101 | 5.852 |
| DeoR | 378-393 | 5.766 |
| PspF | 122-138 | 5.573 |
| RhaS | 205-221 | 5.442 |
| NarP | 129-135 | 5.306 |