| TF name | Position | PWM scan score |
| TyrR | 37-58 | 13.177 |
| PhoB | 372-391 | 11.315 |
| UxuR | 278-295 | 10.142 |
| H-NS | 380-394 | 9.301 |
| SoxS | 191-208 | 8.908 |
| NarL | 279-285 | 8.755 |
| MalT | 29-38 | 8.324 |
| Nac | 352-366 | 8.076 |
| IHF | 40-52 | 7.697 |
| GadE | 357-376 | 7.458 |
| Fis | 371-391 | 7.113 |
| MarA | 367-387 | 6.754 |
| NarP | 184-190 | 6.654 |
| FNR | 40-61 | 6.390 |
| ArgP | 363-375 | 6.125 |
| CRP | 252-273 | 5.679 |
| Rob | 359-379 | 5.575 |
| CpxR | 182-196 | 5.558 |
| UlaR | 276-295 | 5.542 |
| ArcA | 261-321 | 5.523 |
| DnaA | 246-254 | 5.140 |
| XylR | 132-149 | 5.092 |
| GlpR | 98-117 | 5.084 |
| Lrp | 201-212 | 5.051 |