| TF name | Position | PWM scan score |
| FNR | 373-394 | 12.021 |
| Nac | 191-205 | 11.945 |
| NorR | 143-159 | 11.740 |
| FhlA | 43-82 | 11.611 |
| TyrR | 44-65 | 11.389 |
| RhaS | 54-70 | 10.533 |
| CpxR | 382-396 | 9.042 |
| Ada | 150-177 | 9.020 |
| DnaA | 151-159 | 8.889 |
| NagC | 374-396 | 8.421 |
| H-NS | 350-364 | 8.320 |
| CysB | 356-397 | 8.118 |
| AraC | 233-250 | 7.888 |
| IHF | 4-16 | 7.876 |
| Lrp | 376-387 | 7.824 |
| NarP | 215-221 | 7.302 |
| TorR | 88-97 | 7.186 |
| AgaR | 369-392 | 7.053 |
| OmpR | 349-368 | 6.712 |
| XylR | 378-395 | 6.514 |
| DeoR | 319-334 | 6.475 |
| ModE | 339-365 | 6.407 |
| MelR | 379-396 | 6.273 |
| NarL | 173-179 | 5.837 |
| Fis | 51-71 | 5.823 |
| GlpR | 171-190 | 5.708 |
| GadE | 50-69 | 5.627 |
| IdnR | 379-394 | 5.381 |
| PurR | 348-363 | 5.364 |
| ArgP | 387-399 | 5.211 |
| Rob | 337-357 | 5.134 |
| OxyR | 348-392 | 5.118 |
| GalS | 158-173 | 5.041 |
| GalR | 158-173 | 5.041 |