| TF name | Position | PWM scan score |
| FhlA | 34-73 | 11.520 |
| IHF | 376-388 | 10.441 |
| CytR | 309-348 | 9.884 |
| TyrR | 56-77 | 9.703 |
| GntR | 347-366 | 9.511 |
| LacI | 340-360 | 9.378 |
| MalT | 124-133 | 9.245 |
| OmpR | 61-80 | 8.561 |
| H-NS | 311-325 | 8.068 |
| ArgR | 332-347 | 7.798 |
| XylR | 57-74 | 7.606 |
| ArgP | 340-352 | 7.410 |
| CueR | 194-212 | 7.396 |
| GalR | 75-90 | 7.388 |
| GalS | 75-90 | 7.388 |
| GlpR | 303-322 | 7.292 |
| NtrC | 158-174 | 7.142 |
| MarA | 47-67 | 6.951 |
| NarL | 150-156 | 6.918 |
| TorR | 67-76 | 6.877 |
| FadR | 3-19 | 6.727 |
| GcvA | 306-334 | 6.652 |
| NarP | 92-98 | 6.524 |
| RhaS | 275-291 | 6.398 |
| FNR | 297-318 | 6.114 |
| UxuR | 373-390 | 6.096 |
| IdnR | 14-29 | 6.010 |
| MetR | 20-43 | 5.927 |
| SoxS | 326-343 | 5.740 |
| NorR | 346-362 | 5.631 |
| AgaR | 374-397 | 5.295 |
| Rob | 347-367 | 5.022 |
| MelR | 27-44 | 5.007 |