| TF name | Position | PWM scan score |
| TyrR | 89-110 | 14.076 |
| SoxS | 348-365 | 11.441 |
| FNR | 248-269 | 10.340 |
| MelR | 188-205 | 9.377 |
| ArcA | 70-130 | 9.176 |
| MarA | 354-374 | 8.721 |
| ModE | 82-108 | 8.475 |
| OxyR | 82-126 | 8.214 |
| CpxR | 220-234 | 8.129 |
| NarL | 372-378 | 8.006 |
| NarP | 222-228 | 7.860 |
| UlaR | 85-104 | 7.380 |
| PurR | 77-92 | 7.277 |
| IdnR | 185-200 | 7.177 |
| MalT | 285-294 | 6.982 |
| MetJ | 119-126 | 6.692 |
| GadE | 373-392 | 6.407 |
| NtrC | 55-71 | 6.362 |
| PspF | 81-97 | 6.326 |
| Fis | 90-110 | 6.195 |
| Lrp | 245-256 | 5.885 |
| Ada | 81-108 | 5.791 |
| TorR | 100-109 | 5.157 |
| AraC | 63-80 | 5.141 |
| ArgP | 144-156 | 5.061 |