| TF name | Position | PWM scan score |
| MarA | 332-352 | 8.424 |
| AraC | 19-36 | 8.371 |
| CpxR | 336-350 | 7.864 |
| PhoB | 339-358 | 7.590 |
| H-NS | 340-354 | 7.567 |
| GcvA | 338-366 | 7.122 |
| MalT | 382-391 | 7.118 |
| NarL | 267-273 | 7.107 |
| Nac | 258-272 | 7.076 |
| CueR | 281-299 | 7.025 |
| TorR | 340-349 | 6.822 |
| AgaR | 302-325 | 6.733 |
| RhaS | 283-299 | 6.707 |
| GlpR | 182-201 | 6.684 |
| DnaA | 101-109 | 6.632 |
| IHF | 341-353 | 6.576 |
| Lrp | 343-354 | 6.299 |
| UxuR | 291-308 | 5.997 |
| ArcA | 314-374 | 5.802 |
| Fis | 331-351 | 5.786 |
| PhoP | 100-116 | 5.736 |
| MetJ | 373-380 | 5.470 |
| GadE | 271-290 | 5.308 |