| TF name | Position | PWM scan score |
| OmpR | 127-146 | 14.804 |
| Mlc | 151-173 | 12.807 |
| IHF | 207-219 | 11.749 |
| GcvA | 142-170 | 10.894 |
| Rob | 377-397 | 10.701 |
| GadE | 127-146 | 10.597 |
| DeoR | 146-161 | 10.453 |
| CysB | 137-178 | 10.372 |
| ArcA | 173-233 | 10.279 |
| Nac | 33-47 | 9.885 |
| RcsB | 65-78 | 9.832 |
| AraC | 293-310 | 9.593 |
| FadR | 66-82 | 9.505 |
| GntR | 258-277 | 9.382 |
| ArgR | 150-165 | 9.177 |
| ArgP | 63-75 | 8.895 |
| CRP | 142-163 | 8.790 |
| H-NS | 78-92 | 8.541 |
| Lrp | 260-271 | 7.907 |
| MarA | 61-81 | 7.328 |
| CpxR | 146-160 | 7.158 |
| FNR | 346-367 | 7.118 |
| UlaR | 140-159 | 6.998 |
| TorR | 281-290 | 6.915 |
| Fis | 15-35 | 6.876 |
| MalT | 120-129 | 6.654 |
| ModE | 108-134 | 6.540 |
| MetR | 138-161 | 6.493 |
| PhoB | 141-160 | 6.461 |
| NarL | 99-105 | 6.428 |
| XylR | 41-58 | 6.167 |
| NorR | 20-36 | 6.152 |
| MetJ | 31-38 | 5.856 |
| NarP | 158-164 | 5.835 |
| PspF | 140-156 | 5.793 |
| SoxS | 332-349 | 5.608 |
| AgaR | 224-247 | 5.289 |