| TF name | Position | PWM scan score |
| ArcA | 3-63 | 13.562 |
| GntR | 362-381 | 11.780 |
| PhoB | 289-308 | 10.638 |
| CysB | 171-212 | 9.838 |
| UxuR | 19-36 | 9.696 |
| Fis | 23-43 | 9.330 |
| SoxS | 248-265 | 9.246 |
| GcvA | 366-394 | 9.114 |
| FNR | 179-200 | 8.770 |
| H-NS | 362-376 | 8.561 |
| TorR | 44-53 | 8.504 |
| Rob | 36-56 | 8.471 |
| UlaR | 138-157 | 8.265 |
| ArgP | 369-381 | 8.054 |
| IHF | 294-306 | 7.935 |
| OmpR | 360-379 | 7.579 |
| NtrC | 228-244 | 7.496 |
| RcsB | 297-310 | 7.473 |
| ArgR | 161-176 | 7.224 |
| Lrp | 291-302 | 7.002 |
| MarA | 82-102 | 6.860 |
| PhoP | 369-385 | 6.727 |
| ModE | 78-104 | 6.527 |
| PurR | 228-243 | 6.397 |
| NorR | 88-104 | 6.334 |
| NarL | 301-307 | 6.241 |
| Nac | 127-141 | 6.232 |
| RhaS | 255-271 | 6.190 |
| GadE | 197-216 | 6.182 |
| CRP | 20-41 | 6.162 |
| AraC | 225-242 | 6.125 |
| LacI | 232-252 | 6.025 |
| Fur | 368-382 | 5.902 |
| MalT | 218-227 | 5.884 |
| DeoR | 369-384 | 5.329 |
| XylR | 11-28 | 5.290 |
| CpxR | 25-39 | 5.175 |
| MelR | 208-225 | 5.017 |