| TF name | Position | PWM scan score |
| GntR | 209-228 | 11.780 |
| MetJ | 243-250 | 10.810 |
| ArcA | 194-254 | 10.711 |
| PhoB | 136-155 | 10.638 |
| FNR | 318-339 | 10.401 |
| CysB | 18-59 | 9.838 |
| PhoP | 237-253 | 9.601 |
| Nac | 245-259 | 9.258 |
| SoxS | 95-112 | 9.246 |
| GcvA | 213-241 | 9.114 |
| RhaS | 349-365 | 9.079 |
| GalS | 261-276 | 8.867 |
| GalR | 261-276 | 8.867 |
| H-NS | 209-223 | 8.561 |
| IHF | 327-339 | 8.471 |
| Fis | 32-52 | 8.284 |
| ArgP | 216-228 | 8.054 |
| LexA | 231-250 | 7.665 |
| OmpR | 207-226 | 7.579 |
| NtrC | 75-91 | 7.496 |
| RcsB | 144-157 | 7.473 |
| MalT | 384-393 | 7.278 |
| ArgR | 8-23 | 7.224 |
| Lrp | 138-149 | 7.002 |
| MarA | 93-113 | 6.832 |
| NarL | 248-254 | 6.678 |
| LacI | 369-389 | 6.521 |
| PurR | 75-90 | 6.397 |
| GadE | 44-63 | 6.182 |
| AraC | 72-89 | 6.125 |
| FadR | 312-328 | 6.106 |
| UxuR | 32-49 | 6.088 |
| CRP | 211-232 | 5.988 |
| AgaR | 315-338 | 5.903 |
| Fur | 215-229 | 5.902 |
| Rob | 209-229 | 5.838 |
| TorR | 321-330 | 5.552 |
| NarP | 301-307 | 5.498 |
| DeoR | 216-231 | 5.329 |
| MelR | 55-72 | 5.017 |