| TF name | Position | PWM scan score |
| Mlc | 351-373 | 12.481 |
| ArcA | 299-359 | 12.328 |
| SoxS | 355-372 | 10.422 |
| DnaA | 306-314 | 9.967 |
| GcvA | 340-368 | 9.841 |
| NorR | 292-308 | 9.536 |
| ArgR | 363-378 | 9.499 |
| Nac | 325-339 | 9.069 |
| IHF | 329-341 | 8.966 |
| MelR | 272-289 | 8.929 |
| CytR | 269-308 | 8.894 |
| MetR | 356-379 | 8.599 |
| Fis | 319-339 | 8.484 |
| PhoP | 260-276 | 8.465 |
| CRP | 350-371 | 8.400 |
| DeoR | 363-378 | 8.387 |
| TyrR | 316-337 | 8.330 |
| FNR | 308-329 | 8.104 |
| XylR | 336-353 | 8.096 |
| OmpR | 347-366 | 8.042 |
| OxyR | 312-356 | 7.944 |
| UlaR | 10-29 | 7.880 |
| GadE | 96-115 | 7.473 |
| TorR | 232-241 | 7.395 |
| Lrp | 385-396 | 7.343 |
| PhoB | 336-355 | 6.954 |
| Fur | 323-337 | 6.747 |
| CpxR | 307-321 | 6.643 |
| MalT | 130-139 | 6.600 |
| ArgP | 325-337 | 6.589 |
| LacI | 239-259 | 6.542 |
| NarL | 382-388 | 6.516 |
| CysB | 334-375 | 6.376 |
| RhaS | 13-29 | 6.331 |
| PspF | 377-393 | 6.326 |
| IdnR | 336-351 | 6.192 |
| H-NS | 253-267 | 6.188 |
| ModE | 95-121 | 6.156 |
| AgaR | 321-344 | 6.044 |
| NarP | 371-377 | 5.306 |
| FadR | 273-289 | 5.171 |