| TF name | Position | PWM scan score |
| FadR | 175-191 | 13.180 |
| GcvA | 291-319 | 12.220 |
| UlaR | 15-34 | 9.245 |
| RcsB | 6-19 | 8.714 |
| NarP | 318-324 | 8.308 |
| CpxR | 237-251 | 7.936 |
| SoxS | 55-72 | 7.874 |
| Mlc | 274-296 | 7.483 |
| GalR | 210-225 | 7.463 |
| GalS | 210-225 | 7.463 |
| Fis | 281-301 | 7.088 |
| IHF | 148-160 | 7.047 |
| PurR | 171-186 | 7.011 |
| MalT | 27-36 | 7.007 |
| Nac | 293-307 | 6.939 |
| MarA | 53-73 | 6.695 |
| GlpR | 19-38 | 6.632 |
| MelR | 289-306 | 6.110 |
| LacI | 235-255 | 5.892 |
| FNR | 225-246 | 5.887 |
| XylR | 233-250 | 5.876 |
| Lrp | 234-245 | 5.793 |
| ArgP | 233-245 | 5.603 |
| CRP | 295-316 | 5.462 |
| NorR | 54-70 | 5.379 |
| NarL | 42-48 | 5.204 |
| PspF | 222-238 | 5.189 |
| RhaS | 140-156 | 5.022 |