| TF name | Position | PWM scan score |
| MetR | 325-348 | 11.041 |
| ArcA | 317-377 | 10.485 |
| CpxR | 332-346 | 9.280 |
| OmpR | 333-352 | 9.022 |
| DnaA | 117-125 | 8.389 |
| DeoR | 330-345 | 7.319 |
| RcsB | 317-330 | 7.282 |
| NarP | 67-73 | 7.127 |
| GalR | 305-320 | 6.996 |
| GalS | 305-320 | 6.996 |
| NagC | 320-342 | 6.852 |
| NarL | 192-198 | 6.696 |
| AgaR | 352-375 | 6.652 |
| IHF | 313-325 | 6.604 |
| MalT | 115-124 | 6.524 |
| MetJ | 367-374 | 6.380 |
| SoxS | 147-164 | 6.228 |
| FNR | 304-325 | 6.221 |
| GcvA | 244-272 | 6.201 |
| CRP | 301-322 | 6.101 |
| Nac | 287-301 | 6.084 |
| CueR | 219-237 | 5.953 |
| Fis | 341-361 | 5.795 |
| TorR | 241-250 | 5.759 |
| CysB | 207-248 | 5.749 |
| RhaS | 204-220 | 5.633 |
| XylR | 329-346 | 5.569 |
| PspF | 283-299 | 5.486 |
| FruR | 340-357 | 5.463 |
| PurR | 313-328 | 5.236 |
| AraC | 279-296 | 5.185 |
| GlpR | 285-304 | 5.173 |
| ArgR | 369-384 | 5.151 |
| H-NS | 299-313 | 5.060 |