| TF name | Position | PWM scan score |
| MetR | 55-78 | 14.592 |
| TorR | 257-266 | 12.897 |
| GlpR | 237-256 | 11.503 |
| ArgP | 259-271 | 11.257 |
| MelR | 225-242 | 11.053 |
| MarA | 248-268 | 10.901 |
| DeoR | 32-47 | 10.435 |
| ArcA | 330-390 | 9.996 |
| DnaA | 109-117 | 9.952 |
| PhoB | 322-341 | 9.509 |
| IHF | 363-375 | 9.491 |
| RcsB | 64-77 | 9.463 |
| Fur | 18-32 | 9.205 |
| IdnR | 1-16 | 8.925 |
| Fis | 99-119 | 8.039 |
| H-NS | 359-373 | 7.815 |
| GntR | 63-82 | 7.680 |
| PspF | 235-251 | 7.269 |
| MetJ | 382-389 | 7.046 |
| Nac | 373-387 | 6.920 |
| Mlc | 248-270 | 6.665 |
| AraC | 111-128 | 6.636 |
| XylR | 100-117 | 6.615 |
| GcvA | 365-393 | 6.446 |
| NarL | 184-190 | 6.388 |
| FNR | 101-122 | 6.301 |
| CRP | 239-260 | 6.264 |
| UlaR | 42-61 | 5.906 |
| ArgR | 331-346 | 5.900 |
| CytR | 213-252 | 5.791 |
| NarP | 2-8 | 5.698 |
| Lrp | 368-379 | 5.651 |
| CysB | 258-299 | 5.534 |
| FruR | 335-352 | 5.466 |
| Rob | 352-372 | 5.425 |
| GalR | 13-28 | 5.379 |
| GalS | 13-28 | 5.379 |
| NtrC | 200-216 | 5.366 |
| PhoP | 259-275 | 5.198 |
| OmpR | 363-382 | 5.034 |