| TF name | Position | PWM scan score |
| FhlA | 285-324 | 15.650 |
| ArcA | 208-268 | 13.850 |
| H-NS | 233-247 | 13.541 |
| AgaR | 53-76 | 13.059 |
| PhoB | 253-272 | 12.864 |
| ArgP | 54-66 | 12.560 |
| AraC | 257-274 | 12.071 |
| GadE | 35-54 | 11.457 |
| Lrp | 206-217 | 9.963 |
| CRP | 70-91 | 9.404 |
| GcvA | 240-268 | 9.385 |
| IHF | 310-322 | 8.608 |
| XylR | 242-259 | 8.341 |
| UxuR | 55-72 | 8.265 |
| Ada | 230-257 | 8.261 |
| MetR | 321-344 | 8.119 |
| DeoR | 241-256 | 7.965 |
| CysB | 85-126 | 7.760 |
| Mlc | 247-269 | 7.713 |
| ArgR | 231-246 | 7.693 |
| RcsB | 243-256 | 7.593 |
| UlaR | 58-77 | 7.375 |
| OmpR | 235-254 | 7.175 |
| SoxS | 76-93 | 6.998 |
| NarL | 328-334 | 6.944 |
| IdnR | 332-347 | 6.862 |
| TyrR | 307-328 | 6.653 |
| MelR | 87-104 | 6.595 |
| FNR | 35-56 | 6.513 |
| CueR | 152-170 | 6.399 |
| NagC | 210-232 | 6.354 |
| Fur | 45-59 | 6.148 |
| Fis | 340-360 | 6.048 |
| PurR | 374-389 | 6.029 |
| NtrC | 295-311 | 5.960 |
| LexA | 341-360 | 5.812 |
| PspF | 261-277 | 5.482 |
| MalT | 112-121 | 5.445 |
| TrpR | 378-395 | 5.354 |
| FruR | 328-345 | 5.125 |
| CpxR | 42-56 | 5.078 |