| TF name | Position | PWM scan score |
| MarA | 373-393 | 11.350 |
| XylR | 2-19 | 8.830 |
| IdnR | 76-91 | 8.558 |
| NarP | 145-151 | 8.154 |
| NarL | 24-30 | 8.142 |
| H-NS | 182-196 | 8.042 |
| GlpR | 149-168 | 7.724 |
| NorR | 169-185 | 7.537 |
| PhoB | 337-356 | 7.433 |
| FruR | 120-137 | 7.295 |
| Nac | 328-342 | 6.558 |
| SoxS | 375-392 | 6.527 |
| MalT | 326-335 | 6.169 |
| MetJ | 6-13 | 6.100 |
| DnaA | 82-90 | 6.095 |
| RhaS | 241-257 | 6.003 |
| Fis | 329-349 | 5.969 |
| TorR | 308-317 | 5.853 |
| GntR | 306-325 | 5.751 |
| ArgP | 220-232 | 5.659 |
| NtrC | 15-31 | 5.626 |
| MelR | 195-212 | 5.604 |
| LexA | 330-349 | 5.490 |
| UxuR | 336-353 | 5.385 |