| TF name | Position | PWM scan score |
| DnaA | 264-272 | 10.953 |
| MetJ | 103-110 | 8.399 |
| AraC | 299-316 | 8.389 |
| TorR | 313-322 | 8.121 |
| ModE | 348-374 | 8.012 |
| XylR | 74-91 | 7.985 |
| DeoR | 378-393 | 7.810 |
| ArcA | 338-398 | 7.751 |
| IHF | 337-349 | 7.715 |
| UxuR | 310-327 | 7.436 |
| NarP | 114-120 | 7.352 |
| ArgP | 387-399 | 7.202 |
| Nac | 357-371 | 7.145 |
| NtrC | 289-305 | 7.067 |
| CRP | 374-395 | 6.900 |
| NarL | 390-396 | 6.854 |
| NorR | 370-386 | 6.653 |
| RcsB | 380-393 | 6.178 |
| CueR | 150-168 | 6.177 |
| Lrp | 355-366 | 6.077 |
| AgaR | 358-381 | 5.614 |
| CpxR | 336-350 | 5.598 |
| OxyR | 335-379 | 5.559 |
| Fis | 178-198 | 5.314 |
| FNR | 375-396 | 5.286 |