| TF name | Position | PWM scan score |
| CysB | 187-228 | 16.247 |
| ArcA | 180-240 | 15.410 |
| XylR | 99-116 | 14.071 |
| RcsB | 18-31 | 12.961 |
| GcvA | 176-204 | 12.744 |
| GadE | 90-109 | 12.652 |
| NagC | 163-185 | 11.883 |
| OxyR | 74-118 | 11.678 |
| TyrR | 197-218 | 11.582 |
| Mlc | 87-109 | 11.134 |
| ArgP | 299-311 | 11.010 |
| Fur | 97-111 | 10.866 |
| OmpR | 4-23 | 10.401 |
| FNR | 110-131 | 9.652 |
| H-NS | 163-177 | 8.685 |
| Fis | 156-176 | 8.533 |
| ArgR | 195-210 | 8.482 |
| Nac | 95-109 | 8.458 |
| DeoR | 359-374 | 8.309 |
| ModE | 169-195 | 8.229 |
| NarL | 181-187 | 8.190 |
| PurR | 367-382 | 8.182 |
| Rob | 189-209 | 8.134 |
| IHF | 199-211 | 7.511 |
| SoxS | 311-328 | 7.312 |
| GntR | 161-180 | 7.287 |
| PhoP | 208-224 | 7.199 |
| MarA | 202-222 | 7.183 |
| AraC | 213-230 | 7.123 |
| MelR | 198-215 | 7.027 |
| MetR | 360-383 | 6.988 |
| TorR | 358-367 | 6.916 |
| IdnR | 362-377 | 6.866 |
| Lrp | 379-390 | 6.755 |
| NorR | 90-106 | 6.744 |
| FhlA | 352-391 | 6.584 |
| PhoB | 192-211 | 6.396 |
| DnaA | 209-217 | 6.355 |
| CpxR | 351-365 | 6.108 |
| CytR | 73-112 | 5.952 |
| UlaR | 216-235 | 5.888 |
| AgaR | 16-39 | 5.829 |
| NtrC | 367-383 | 5.757 |
| CRP | 191-212 | 5.183 |
| PspF | 218-234 | 5.032 |