| TF name | Position | PWM scan score |
| AgaR | 220-243 | 17.404 |
| TyrR | 44-65 | 13.056 |
| CytR | 145-184 | 12.382 |
| ArcA | 169-229 | 11.521 |
| Fur | 366-380 | 11.281 |
| PhoB | 168-187 | 11.007 |
| Fis | 373-393 | 10.312 |
| RcsB | 88-101 | 10.047 |
| H-NS | 90-104 | 10.042 |
| SoxS | 225-242 | 9.990 |
| Lrp | 226-237 | 9.716 |
| Mlc | 177-199 | 9.517 |
| UlaR | 226-245 | 9.360 |
| ArgR | 191-206 | 9.098 |
| DnaA | 54-62 | 9.055 |
| IHF | 223-235 | 8.992 |
| UxuR | 185-202 | 8.933 |
| AraC | 268-285 | 8.920 |
| PhoP | 143-159 | 8.774 |
| Ada | 101-128 | 8.728 |
| GadE | 375-394 | 8.722 |
| Rob | 303-323 | 8.435 |
| Nac | 80-94 | 8.376 |
| ArgP | 266-278 | 8.362 |
| NarL | 83-89 | 8.353 |
| GcvA | 270-298 | 8.141 |
| FNR | 81-102 | 7.978 |
| GntR | 246-265 | 7.771 |
| NorR | 352-368 | 7.537 |
| XylR | 45-62 | 7.166 |
| FadR | 147-163 | 7.158 |
| OmpR | 135-154 | 7.054 |
| MarA | 267-287 | 6.963 |
| CRP | 178-199 | 6.941 |
| CpxR | 5-19 | 6.581 |
| GlpR | 62-81 | 6.517 |
| NagC | 166-188 | 6.452 |
| MetJ | 122-129 | 6.380 |
| MetR | 92-115 | 6.098 |
| PspF | 363-379 | 5.884 |
| DcuR | 257-311 | 5.797 |
| ModE | 125-151 | 5.705 |
| FhlA | 131-170 | 5.640 |
| MelR | 338-355 | 5.445 |
| CysB | 278-319 | 5.420 |
| MalT | 252-261 | 5.241 |
| TorR | 107-116 | 5.031 |