| TF name | Position | PWM scan score |
| ArcA | 137-197 | 11.466 |
| Nac | 180-194 | 10.618 |
| AgaR | 179-202 | 10.239 |
| FNR | 168-189 | 10.107 |
| H-NS | 197-211 | 9.990 |
| TorR | 181-190 | 9.978 |
| PhoB | 37-56 | 9.939 |
| MalT | 254-263 | 9.921 |
| Rob | 121-141 | 8.080 |
| NagC | 51-73 | 7.829 |
| CpxR | 44-58 | 7.680 |
| UlaR | 37-56 | 7.531 |
| Mlc | 183-205 | 7.282 |
| CytR | 104-143 | 7.254 |
| GadE | 50-69 | 7.168 |
| GalR | 342-357 | 6.860 |
| GalS | 342-357 | 6.860 |
| MelR | 151-168 | 6.769 |
| LacI | 94-114 | 6.534 |
| ArgP | 14-26 | 6.517 |
| IHF | 118-130 | 6.424 |
| PurR | 90-105 | 6.334 |
| DnaA | 306-314 | 6.246 |
| UxuR | 38-55 | 6.163 |
| CysB | 166-207 | 5.967 |
| Lrp | 46-57 | 5.957 |
| MetJ | 12-19 | 5.910 |
| AraC | 160-177 | 5.874 |
| MarA | 269-289 | 5.595 |
| NarL | 123-129 | 5.551 |
| RhaS | 287-303 | 5.446 |
| Fis | 275-295 | 5.415 |
| GlpR | 191-210 | 5.372 |
| MetR | 84-107 | 5.309 |
| OmpR | 184-203 | 5.184 |