| TF name | Position | PWM scan score |
| Nac | 224-238 | 11.978 |
| MetR | 230-253 | 11.735 |
| FNR | 222-243 | 11.195 |
| GalR | 322-337 | 10.852 |
| GalS | 322-337 | 10.852 |
| ArcA | 223-283 | 10.764 |
| NarP | 277-283 | 9.938 |
| FruR | 116-133 | 9.870 |
| UxuR | 112-129 | 9.831 |
| AraC | 138-155 | 9.810 |
| SoxS | 327-344 | 9.649 |
| NtrC | 289-305 | 9.457 |
| IHF | 377-389 | 8.936 |
| Ada | 209-236 | 8.555 |
| PspF | 232-248 | 8.159 |
| Mlc | 218-240 | 7.805 |
| PurR | 195-210 | 7.787 |
| Rob | 118-138 | 7.655 |
| RcsB | 226-239 | 7.372 |
| Lrp | 201-212 | 7.365 |
| AgaR | 214-237 | 7.115 |
| ArgP | 268-280 | 7.031 |
| H-NS | 261-275 | 6.719 |
| ArgR | 269-284 | 6.673 |
| NarL | 328-334 | 6.670 |
| OmpR | 253-272 | 6.570 |
| GcvA | 195-223 | 6.260 |
| Fis | 253-273 | 6.201 |
| XylR | 323-340 | 6.167 |
| FadR | 140-156 | 6.086 |
| CpxR | 220-234 | 6.028 |
| CRP | 112-133 | 6.016 |
| DeoR | 221-236 | 5.807 |
| RhaS | 95-111 | 5.735 |
| DnaA | 114-122 | 5.694 |
| UlaR | 230-249 | 5.682 |
| MarA | 192-212 | 5.579 |
| MalT | 299-308 | 5.473 |
| NagC | 353-375 | 5.357 |
| TrpR | 99-116 | 5.126 |
| LexA | 173-192 | 5.024 |