| TF name | Position | PWM scan score |
| GcvA | 15-43 | 17.870 |
| OmpR | 40-59 | 13.538 |
| CysB | 350-391 | 12.849 |
| NagC | 370-392 | 12.411 |
| AraC | 343-360 | 11.932 |
| FNR | 43-64 | 11.315 |
| IHF | 33-45 | 11.061 |
| MelR | 30-47 | 10.284 |
| NtrC | 199-215 | 10.268 |
| DeoR | 369-384 | 9.714 |
| RcsB | 56-69 | 9.650 |
| ModE | 92-118 | 9.629 |
| UxuR | 312-329 | 8.666 |
| GadE | 49-68 | 8.403 |
| CRP | 40-61 | 8.204 |
| MetR | 47-70 | 8.175 |
| NarL | 26-32 | 8.169 |
| ArcA | 16-76 | 7.903 |
| H-NS | 383-397 | 7.870 |
| LacI | 43-63 | 7.572 |
| Mlc | 42-64 | 7.432 |
| Lrp | 56-67 | 7.356 |
| Fis | 22-42 | 6.929 |
| CytR | 66-105 | 6.814 |
| PhoB | 33-52 | 6.535 |
| GlpR | 373-392 | 6.049 |
| ArgR | 89-104 | 5.820 |
| Nac | 375-389 | 5.687 |
| PhoP | 377-393 | 5.651 |
| ArgP | 55-67 | 5.599 |
| SoxS | 48-65 | 5.263 |
| MarA | 17-37 | 5.257 |
| MalT | 66-75 | 5.222 |
| AgaR | 90-113 | 5.019 |