| TF name | Position | PWM scan score |
| ArgR | 313-328 | 11.869 |
| FNR | 167-188 | 9.777 |
| NarP | 261-267 | 8.982 |
| TorR | 4-13 | 8.822 |
| LexA | 306-325 | 8.372 |
| Fis | 302-322 | 8.203 |
| CueR | 352-370 | 8.000 |
| CpxR | 132-146 | 7.831 |
| MetJ | 57-64 | 7.811 |
| PhoB | 289-308 | 7.755 |
| GcvA | 324-352 | 7.684 |
| IHF | 293-305 | 6.906 |
| NorR | 175-191 | 6.732 |
| Lrp | 5-16 | 6.719 |
| SoxS | 167-184 | 6.419 |
| AraC | 234-251 | 6.361 |
| GalR | 42-57 | 6.266 |
| GalS | 42-57 | 6.266 |
| NarL | 215-221 | 5.986 |
| OmpR | 368-387 | 5.891 |
| Nac | 19-33 | 5.820 |
| XylR | 326-343 | 5.582 |
| UxuR | 374-391 | 5.555 |
| MelR | 379-396 | 5.513 |
| RhaS | 47-63 | 5.483 |
| GadE | 368-387 | 5.476 |
| IdnR | 166-181 | 5.344 |
| H-NS | 282-296 | 5.342 |
| GlpR | 196-215 | 5.279 |