| TF name | Position | PWM scan score |
| ArcA | 115-175 | 13.659 |
| OmpR | 142-161 | 12.879 |
| Mlc | 118-140 | 11.588 |
| ArgR | 370-385 | 10.770 |
| CpxR | 375-389 | 10.663 |
| AgaR | 172-195 | 10.293 |
| ArgP | 378-390 | 10.245 |
| Fis | 128-148 | 10.112 |
| GntR | 119-138 | 9.901 |
| MalT | 76-85 | 9.843 |
| CytR | 144-183 | 9.721 |
| MarA | 139-159 | 9.459 |
| TorR | 188-197 | 9.371 |
| PspF | 153-169 | 9.312 |
| H-NS | 332-346 | 9.249 |
| PhoP | 132-148 | 8.970 |
| Ada | 162-189 | 8.561 |
| GcvA | 347-375 | 8.213 |
| NarP | 3-9 | 8.025 |
| IHF | 165-177 | 7.897 |
| Lrp | 260-271 | 7.895 |
| UxuR | 196-213 | 7.780 |
| PhoB | 365-384 | 7.730 |
| MelR | 252-269 | 7.415 |
| SoxS | 155-172 | 7.347 |
| XylR | 163-180 | 7.266 |
| RcsB | 143-156 | 7.216 |
| FNR | 140-161 | 7.198 |
| NarL | 307-313 | 6.944 |
| DnaA | 359-367 | 6.741 |
| CRP | 167-188 | 6.687 |
| DcuR | 142-196 | 6.384 |
| NagC | 359-381 | 6.287 |
| CueR | 357-375 | 6.260 |
| CysB | 162-203 | 6.098 |
| AraC | 113-130 | 5.937 |
| DeoR | 232-247 | 5.805 |
| Fur | 139-153 | 5.687 |
| NorR | 175-191 | 5.189 |
| Nac | 160-174 | 5.161 |
| FhlA | 118-157 | 5.098 |