| TF name | Position | PWM scan score |
| PhoP | 149-165 | 11.501 |
| AgaR | 120-143 | 11.473 |
| ArgP | 150-162 | 11.190 |
| ArgR | 383-398 | 10.966 |
| DnaA | 370-378 | 10.953 |
| NagC | 323-345 | 10.726 |
| ModE | 194-220 | 10.217 |
| IHF | 122-134 | 9.292 |
| CpxR | 35-49 | 9.054 |
| Rob | 142-162 | 8.766 |
| XylR | 32-49 | 8.573 |
| OmpR | 142-161 | 8.470 |
| ArcA | 99-159 | 8.200 |
| DcuR | 118-172 | 8.111 |
| Mlc | 136-158 | 8.089 |
| LacI | 145-165 | 8.006 |
| LexA | 112-131 | 7.996 |
| Lrp | 199-210 | 7.894 |
| RcsB | 200-213 | 7.700 |
| UlaR | 354-373 | 7.471 |
| H-NS | 72-86 | 7.398 |
| GlpR | 12-31 | 7.390 |
| FNR | 145-166 | 7.177 |
| NarP | 250-256 | 7.162 |
| CysB | 200-241 | 7.061 |
| PhoB | 145-164 | 7.014 |
| Fis | 326-346 | 6.920 |
| Fur | 152-166 | 6.889 |
| SoxS | 145-162 | 6.826 |
| CytR | 355-394 | 6.825 |
| RhaS | 77-93 | 6.331 |
| AraC | 116-133 | 6.193 |
| CRP | 350-371 | 6.094 |
| TorR | 361-370 | 6.088 |
| MalT | 48-57 | 6.044 |
| TyrR | 360-381 | 6.041 |
| MetR | 107-130 | 5.773 |
| PspF | 193-209 | 5.656 |
| UxuR | 1-18 | 5.476 |
| NarL | 243-249 | 5.446 |
| DeoR | 30-45 | 5.400 |
| GadE | 142-161 | 5.341 |
| Ada | 142-169 | 5.333 |
| MetJ | 268-275 | 5.258 |
| MelR | 348-365 | 5.237 |
| FadR | 304-320 | 5.008 |