| TF name | Position | PWM scan score |
| MelR | 361-378 | 10.473 |
| SoxS | 373-390 | 10.308 |
| NarP | 54-60 | 9.705 |
| NarL | 310-316 | 8.755 |
| ArgR | 225-240 | 8.687 |
| FruR | 169-186 | 8.286 |
| Nac | 88-102 | 8.053 |
| UlaR | 357-376 | 7.724 |
| CytR | 248-287 | 7.653 |
| NtrC | 32-48 | 6.555 |
| DnaA | 22-30 | 6.168 |
| MalT | 268-277 | 5.862 |
| RhaS | 284-300 | 5.678 |
| CueR | 222-240 | 5.503 |
| CRP | 231-252 | 5.463 |
| TorR | 89-98 | 5.301 |
| IHF | 328-340 | 5.237 |
| MarA | 107-127 | 5.183 |
| ModE | 300-326 | 5.139 |
| AraC | 275-292 | 5.139 |
| FadR | 344-360 | 5.102 |
| DeoR | 112-127 | 5.007 |