| TF name | Position | PWM scan score |
| TorR | 53-62 | 9.688 |
| MetJ | 254-261 | 9.118 |
| ArgR | 380-395 | 8.868 |
| GalS | 244-259 | 8.547 |
| GalR | 244-259 | 8.547 |
| AraC | 54-71 | 8.363 |
| AgaR | 365-388 | 8.307 |
| IHF | 248-260 | 7.961 |
| Nac | 58-72 | 7.694 |
| RhaS | 202-218 | 7.438 |
| GlpR | 277-296 | 7.398 |
| DeoR | 371-386 | 7.242 |
| FNR | 248-269 | 7.195 |
| NarL | 232-238 | 7.080 |
| NagC | 371-393 | 6.806 |
| UlaR | 356-375 | 6.751 |
| H-NS | 382-396 | 6.528 |
| Rob | 302-322 | 6.478 |
| PhoP | 224-240 | 6.477 |
| MarA | 361-381 | 6.418 |
| Lrp | 260-271 | 6.296 |
| NarP | 288-294 | 6.275 |
| Ada | 137-164 | 6.200 |
| NtrC | 77-93 | 5.707 |
| MalT | 2-11 | 5.630 |
| Fis | 253-273 | 5.590 |
| RcsB | 258-271 | 5.499 |
| SoxS | 379-396 | 5.456 |
| NorR | 365-381 | 5.268 |
| Mlc | 368-390 | 5.257 |