| TF name | Position | PWM scan score |
| RcsB | 28-41 | 13.055 |
| PhoB | 336-355 | 11.606 |
| Lrp | 27-38 | 11.058 |
| GcvA | 367-395 | 10.924 |
| Nac | 17-31 | 10.654 |
| ArcA | 180-240 | 10.536 |
| MetJ | 322-329 | 10.216 |
| NagC | 187-209 | 10.003 |
| H-NS | 207-221 | 9.574 |
| AraC | 171-188 | 9.418 |
| SoxS | 371-388 | 9.307 |
| DeoR | 231-246 | 8.446 |
| IHF | 282-294 | 8.425 |
| XylR | 226-243 | 7.962 |
| GadE | 380-399 | 7.847 |
| MetR | 208-231 | 7.834 |
| UlaR | 197-216 | 7.737 |
| AgaR | 222-245 | 7.547 |
| OmpR | 186-205 | 7.373 |
| NarP | 153-159 | 7.162 |
| Ada | 153-180 | 7.127 |
| PspF | 175-191 | 7.099 |
| TyrR | 27-48 | 6.527 |
| FruR | 149-166 | 6.526 |
| UxuR | 176-193 | 6.486 |
| ArgR | 235-250 | 6.357 |
| NarL | 73-79 | 6.332 |
| NorR | 143-159 | 6.243 |
| Fis | 374-394 | 5.650 |
| GntR | 325-344 | 5.510 |
| FNR | 18-39 | 5.465 |
| Fur | 24-38 | 5.180 |
| PhoP | 331-347 | 5.088 |