| TF name | Position | PWM scan score |
| RhaS | 58-74 | 11.330 |
| MetJ | 148-155 | 11.198 |
| SoxS | 375-392 | 10.383 |
| Nac | 143-157 | 9.762 |
| DeoR | 44-59 | 9.391 |
| Fis | 268-288 | 8.218 |
| GadE | 200-219 | 7.701 |
| Lrp | 385-396 | 7.681 |
| AraC | 271-288 | 7.662 |
| IHF | 24-36 | 7.549 |
| NagC | 138-160 | 7.407 |
| NarL | 190-196 | 7.309 |
| MarA | 373-393 | 7.139 |
| H-NS | 357-371 | 7.118 |
| OmpR | 138-157 | 6.456 |
| CysB | 350-391 | 6.394 |
| MalT | 21-30 | 6.360 |
| Rob | 216-236 | 6.335 |
| PurR | 180-195 | 6.204 |
| DnaA | 368-376 | 5.767 |
| RcsB | 127-140 | 5.266 |