| TF name | Position | PWM scan score |
| CysB | 345-386 | 15.427 |
| FadR | 45-61 | 12.227 |
| RcsB | 338-351 | 10.870 |
| IHF | 196-208 | 10.852 |
| GntR | 152-171 | 9.505 |
| NarL | 27-33 | 8.782 |
| OmpR | 189-208 | 8.066 |
| ArgP | 370-382 | 7.976 |
| H-NS | 177-191 | 7.914 |
| NagC | 343-365 | 7.581 |
| Lrp | 337-348 | 7.566 |
| DeoR | 38-53 | 7.550 |
| CpxR | 228-242 | 7.485 |
| Fis | 155-175 | 7.340 |
| MarA | 42-62 | 7.000 |
| Nac | 341-355 | 6.864 |
| GadE | 199-218 | 6.635 |
| Rob | 369-389 | 6.494 |
| FNR | 26-47 | 6.441 |
| DnaA | 238-246 | 6.153 |
| GlpR | 367-386 | 6.080 |
| ArgR | 277-292 | 5.988 |
| MetR | 113-136 | 5.969 |
| AraC | 334-351 | 5.535 |
| NorR | 190-206 | 5.391 |
| CueR | 158-176 | 5.337 |