| TF name | Position | PWM scan score |
| ArcA | 250-310 | 20.511 |
| CysB | 239-280 | 15.247 |
| Fur | 122-136 | 13.076 |
| ArgR | 259-274 | 11.933 |
| GcvA | 94-122 | 11.734 |
| OmpR | 265-284 | 11.480 |
| TorR | 61-70 | 11.455 |
| PurR | 240-255 | 11.453 |
| H-NS | 98-112 | 11.371 |
| CytR | 126-165 | 11.236 |
| NagC | 270-292 | 10.566 |
| GlpR | 278-297 | 10.172 |
| XylR | 261-278 | 10.170 |
| Rob | 197-217 | 9.882 |
| FadR | 216-232 | 9.652 |
| PhoB | 338-357 | 9.492 |
| FNR | 267-288 | 9.487 |
| AgaR | 287-310 | 9.477 |
| Fis | 174-194 | 9.440 |
| Nac | 299-313 | 8.990 |
| ModE | 272-298 | 8.947 |
| CueR | 329-347 | 8.721 |
| DeoR | 343-358 | 8.289 |
| GadE | 254-273 | 8.098 |
| IHF | 240-252 | 8.091 |
| MelR | 181-198 | 7.849 |
| CRP | 121-142 | 7.653 |
| ArgP | 280-292 | 7.519 |
| GntR | 264-283 | 7.220 |
| Lrp | 303-314 | 7.167 |
| NarL | 234-240 | 7.080 |
| MarA | 295-315 | 7.033 |
| MetR | 257-280 | 6.656 |
| OxyR | 271-315 | 5.977 |
| SoxS | 297-314 | 5.870 |
| FruR | 195-212 | 5.793 |
| RcsB | 259-272 | 5.347 |
| AraC | 233-250 | 5.347 |
| CpxR | 264-278 | 5.331 |
| DnaA | 103-111 | 5.046 |