| TF name | Position | PWM scan score |
| ArcA | 25-85 | 22.458 |
| CytR | 17-56 | 22.211 |
| CysB | 31-72 | 16.968 |
| FNR | 38-59 | 14.261 |
| Nac | 178-192 | 12.138 |
| TorR | 51-60 | 12.129 |
| PurR | 15-30 | 11.453 |
| AraC | 210-227 | 11.443 |
| GcvA | 44-72 | 9.843 |
| OmpR | 38-57 | 9.836 |
| SoxS | 72-89 | 9.574 |
| NagC | 33-55 | 9.517 |
| H-NS | 37-51 | 9.478 |
| MetR | 205-228 | 9.444 |
| MetJ | 357-364 | 9.381 |
| MarA | 70-90 | 8.904 |
| UlaR | 207-226 | 8.890 |
| Rob | 213-233 | 8.717 |
| AgaR | 214-237 | 8.634 |
| IHF | 14-26 | 8.591 |
| RcsB | 214-227 | 8.547 |
| ArgR | 34-49 | 8.514 |
| GadE | 7-26 | 8.007 |
| ModE | 25-51 | 7.879 |
| XylR | 104-121 | 7.862 |
| Fis | 49-69 | 7.812 |
| Fur | 180-194 | 7.759 |
| ArgP | 37-49 | 7.525 |
| NarP | 289-295 | 7.377 |
| PhoP | 264-280 | 7.211 |
| Lrp | 213-224 | 7.044 |
| IdnR | 338-353 | 6.642 |
| MalT | 293-302 | 6.636 |
| CaiF | 101-145 | 6.596 |
| CRP | 35-56 | 6.589 |
| GlpR | 53-72 | 6.540 |
| Mlc | 112-134 | 6.243 |
| OxyR | 12-56 | 6.168 |
| TyrR | 32-53 | 5.970 |
| PspF | 121-137 | 5.936 |
| DeoR | 122-137 | 5.372 |
| DnaA | 10-18 | 5.321 |
| NarL | 103-109 | 5.232 |
| CpxR | 154-168 | 5.103 |
| GntR | 137-156 | 5.075 |