| TF name | Position | PWM scan score |
| MalT | 283-292 | 9.026 |
| LacI | 310-330 | 8.758 |
| FadR | 35-51 | 8.333 |
| RhaS | 317-333 | 8.027 |
| MetJ | 337-344 | 7.682 |
| GntR | 352-371 | 7.565 |
| NtrC | 265-281 | 6.428 |
| NarL | 311-317 | 6.388 |
| DnaA | 294-302 | 5.954 |
| Nac | 281-295 | 5.523 |
| NarP | 355-361 | 5.507 |
| MarA | 47-67 | 5.352 |
| UlaR | 44-63 | 5.322 |
| FruR | 211-228 | 5.208 |
| CueR | 125-143 | 5.026 |